Merck Manual

Please confirm that you are a health care professional

honeypot link



Christopher J. LaRosa

, MD, Perelman School of Medicine at The University of Pennsylvania

Reviewed/Revised Dec 2022

Cystinuria is an inherited defect of the renal tubules in which reabsorption of cystine (the homodimer of the amino acid cysteine) is impaired, urinary excretion is increased, and cystine stones form in the urinary tract. Symptoms are colic caused by stones and perhaps urinary infection or the sequela of chronic kidney disease. Diagnosis is by measurement of cystine excretion in the urine. Treatment is with increased fluid intake and alkalinization of the urine.

Cystinuria was originally classified according to urinary excretion of cystine and dibasic amino acids in obligate carriers. In this classification, parents of affected children were assessed as having either normal (type I), moderate (type III), or significant (type II) increases in cystine excretion.

A newer classification is based on genotype: Type A patients have homozygous mutations in the gene SLC3A1 and type B patients have homozygous mutations in SLC7A9. These genes encode proteins that together form a heterodimer responsible for cystine and dibasic amino acid transport in the proximal tubule.

Pathophysiology of Cystinuria

The primary defect results in diminished renal proximal tubular reabsorption of cystine and increased urinary cystine concentration. Cystine is poorly soluble in acidic urine, so when its urinary concentration exceeds its solubility, crystals precipitate and cystine kidney stones Urinary Calculi Urinary calculi are solid particles in the urinary system. They may cause pain, nausea, vomiting, hematuria, and, possibly, chills and fever due to secondary infection. Diagnosis is based on... read more form. Males are generally affected more than females.

Resorption of other dibasic amino acids (lysine, ornithine, arginine) is also impaired but causes no problems because these amino acids have an alternative transport system separate from that shared with cystine. Furthermore, they are more soluble than cystine in urine, and their increased excretion does not result in crystal or stone formation. Their absorption (and that of cystine) is also decreased in the small bowel.

Symptoms and Signs of Cystinuria

Symptoms of cystinuria, most commonly renal colic, may occur in infants but usually appear between ages 10 and 30.

Diagnosis of Cystinuria

  • Analysis of collected kidney stones

  • Microscopic examination of urinary sediment

  • Measurement of urinary cystine excretion

Radiopaque cystine stones form in the renal pelvis or bladder. Staghorn stones are common.

Cystine may appear in the urine as yellow-brown hexagonal crystals, which are diagnostic.

Excessive cystine in the urine may be detected with the nitroprusside cyanide test. Quantitative cystine excretion is typically > 400 mg/day in cystinuria (normal is < 30 mg/day).

Treatment of Cystinuria

  • High fluid intake

  • Alkalinization of the urine

  • Dietary sodium restriction

  • Dietary animal protein restriction (when possible)

End-stage renal disease Chronic Kidney Disease Chronic kidney disease (CKD) is long-standing, progressive deterioration of renal function. Symptoms develop slowly and in advanced stages include anorexia, nausea, vomiting, stomatitis, dysgeusia... read more Chronic Kidney Disease may develop. Decreasing urinary cystine concentration below about 250 to 300 mg/L (1 to 1.25 mmol/L) decreases renal toxicity and can allow clearance of cystine in solution. This decrease is accomplished by increasing urine volume with fluid intake sufficient to provide a urine flow rate of 1.5 to 2 L/m2/day, which could require fluid intake as high as 2 to 4 L/day (1 Treatment references Cystinuria is an inherited defect of the renal tubules in which reabsorption of cystine (the homodimer of the amino acid cysteine) is impaired, urinary excretion is increased, and cystine stones... read more ). Hydration is particularly important at night when urinary volume and pH drop.

Alkalinization of the urine to pH > 7.0 with potassium citrate or potassium bicarbonate 1 mEq/kg orally 3 to 4 times a day and in some cases acetazolamide 5 mg/kg (up to 250 mg) orally at bedtime increases the solubility of cystine significantly.

Mild restrictions of dietary sodium (100 mEq/day) and animal protein (0.8 to 1.0 g/kg/day) may help reduce cystine excretion.

When high fluid intake and alkalinization do not reduce stone formation, other oral drugs may be tried. Penicillamine (7.5 mg/kg 4 times a day in young children and 125 mg to 0.5 g 4 times a day in older children) improves cystine solubility, but toxicity limits its usefulness. About half of all patients develop some toxic manifestation, such as fever, rash, arthralgias, or, less commonly, nephrotic syndrome Overview of Nephrotic Syndrome Nephrotic syndrome is urinary excretion of > 3 g of protein/day due to a glomerular disorder plus edema and hypoalbuminemia. It is more common among children and has both primary and secondary... read more , pancytopenia, or a lupus-like reaction. Pyridoxine supplements (50 mg once/day) should be given with penicillamine. Tiopronin (100 to 300 mg 4 times a day) can be used instead of penicillamine to treat some children because it has a lower frequency of adverse effects. Captopril (0.3 mg/kg 3 times a day) is not as effective as penicillamine but is less toxic. Close monitoring of response to therapy is very important.

Animal models (eg, gene knockout mice) are currently being used toward the development of novel therapies for cystinosis (2 Treatment references Cystinuria is an inherited defect of the renal tubules in which reabsorption of cystine (the homodimer of the amino acid cysteine) is impaired, urinary excretion is increased, and cystine stones... read more ). Clinical trials are currently being done to explore the efficacy of several interventions, including bucillamine, tolvaptan, and alpha-lipoic acid.

Treatment references

  • 1. Claes DJ, Jackson E: Cystinuria: Mechanisms and management. Pediatr Nephrol 27(11):2031–2038, 2012. doi: 10.1007/s00467-011-2092-6

  • 2. Sahota A, Tischfield JA, Goldfarb DS, et al: Cystinuria: Genetic aspects, mouse models, and a new approach to therapy. Urolithiasis 47(1):57–66, 2019. doi: 10.1007/s00240-018-1101-7

Key Points

  • Defective urinary resorption of cystine increases urinary cystine levels, leading to cystine kidney stones and sometimes chronic kidney disease.

  • Yellow-brown hexagonal crystals in the urine are pathognomonic; quantitative cystine excretion is typically > 400 mg/day.

  • Treat with increased fluid intake to give urine output of 1.5 to 2 L/m2/day, and alkalinize urine with potassium citrate or potassium bicarbonate.

  • Restrict dietary sodium and animal protein.

  • Drugs such as penicillamine, tiopronin, or captopril may be necessary, but adverse effects are a concern.

Drugs Mentioned In This Article

Drug Name Select Trade
Arginine, Nutricia SHS L-Arginine, R-Gene
NIPRIDE RTU , Nitropress
Citrolith , Urocit-K
Effer-K, K Plus Care ET , Klor-Con EF, Klorvess, K-Lyte, K-Lyte DS, K-Vescent
Diamox, Diamox Sequels
Cuprimine, Depen, D-PENAMINE
B-Natal, Neuro-K-500
Thiola, Thiola EC
NOTE: This is the Professional Version. CONSUMERS: View Consumer Version
quiz link

Test your knowledge

Take a Quiz!