There are over 190 recognized species of mycobacteria, mostly found in the physical environment rather than in humans (1). New species and infections are reported regularly. (See also Tuberculosis.) Many of these organisms are ubiquitous in soil, dust, and water.
Mycobacteria other than Mycobacterium tuberculosis can be human pathogens, but they are much less virulent for humans than M. tuberculosis and, therefore, most exposures do not cause infection and many infections do not cause disease. Infections caused by these organisms have been called atypical, environmental, and nontuberculous mycobacterial (NTM) infections.
The occurrence of disease caused by NTM infections usually requires a defect in local or systemic host immune defenses. People at highest risk are those with chronic lung disease (including cystic fibrosis, bronchiectasis due to causes other than cystic fibrosis, and chronic obstructive pulmonary disease), people with HIV infection, frail older adults, and immunocompromised patients, but others with less obvious immunocompromise can develop progressive disease (2).
NTM infections are usually noncommunicable (ie, they are usually acquired from the environment rather than from infected people), so they are not reportable public health diseases in most states in the United States, and it is difficult to accurately determine the incidence of NTM infection. Also, isolation of an NTM organism from a fluid or tissue sample does not necessarily mean it is the cause of disease.
Nonetheless, the number of patients presenting with NTM infection that requires treatment appears to be increasing. It is unclear how much of this apparent increase is due to greater awareness and improved diagnostic testing and how much is an actual increased incidence of infection (3). Longer survival of patients with cystic fibrosis and patients with other predisposing lung diseases may be a factor. Because NTM organisms are rather resistant to routine levels of chlorine in public water (4), greater exposure to aerosolized water sources through routine showering, water misters, or decorative water displays could be playing a role. Climate change may also play a role because a warmer, wetter climate extends the areas that NTM organisms can inhabit. Worldwide, there is considerable geographic diversity in the prevalence of NTM organisms in clinical specimens and environmental sources. In the United States, warmer, wet southern climates generally have more NTM isolates than do colder, drier northern climates.
Mycobacterium avium complex (MAC) includes two closely related species, M. avium and M. intracellulare, and accounts for most NTM disease, but M. abscessus is increasingly becoming common globally (5). Other causative species of NTM disease are M. kansasii, M. xenopi, M. marinum, M. ulcerans, M. fortuitum, and M. chelonae (M. fortuitum and M. chelonae are related to M. abscessus). Although person-to-person transmission of most NTM infections is generally not thought to occur, M. abscessus may be transmitted among patients with cystic fibrosis.
The lungs are the most common site of NTM infection; most of these lung infections are caused by MAC but can also be caused by M. kansasii, M. xenopi, or M. abscessus. The lymph nodes, bones and joints, skin, and wounds are other sites that may be infected. These organisms are usually resistant to anti-TB medications (except for M. kansasii and M. xenopi).
The diagnosis of NTM infections is typically made via acid-fast bacilli stain and culture of fluid or tissue samples. Although nucleic acid amplification tests (NAATs) exist for the most common NTM organisms, in the United States speciation is increasingly done in state public health laboratories using gene sequencing and other methods such as mass spectrometry.
NTM infections are best managed by a specialist with particular expertise in that area.
General references
1. Matsumoto Y, Kinjo T, Motooka D, et al. Comprehensive subspecies identification of 175 nontuberculous mycobacteria species based on 7547 genomic profiles. Emerg Microbes Infect. 2019;8(1):1043-1053. doi:10.1080/22221751.2019.1637702
2. Floto RA, Olivier KN, Saiman L, et al. US Cystic Fibrosis Foundation and European Cystic Fibrosis Society consensus recommendations for the management of non-tuberculous mycobacteria in individuals with cystic fibrosis. Thorax. 2016;71 Suppl 1(Suppl 1):i1-i22. doi:10.1136/thoraxjnl-2015-207360
3. Prevots DR, Marshall JE, Wagner D, Morimoto K. Global Epidemiology of Nontuberculous Mycobacterial Pulmonary Disease: A Review. Clin Chest Med. 2023;44(4):675-721. doi:10.1016/j.ccm.2023.08.012
4. Norton GJ, Williams M, Falkinham JO 3rd, Honda JR. Physical measures to reduce exposure to tap water-associated nontuberculous mycobacteria. Front Public Health. 2020;8:190. doi:10.3389/fpubh.2020.00190
5. Pereira JV, Wong CYX, Sng LH, Low JGH, Ng DHL. Longitudinal epidemiology of pulmonary nontuberculous mycobacteria and tuberculosis in Singapore (2006-2024): Emerging dominance of Mycobacterium abscessus. Int J Infect Dis. Published online September 10, 2025. doi:10.1016/j.ijid.2025.108054
Pulmonary Disease
One common clinical scenario of Mycobacterium avium complex (MAC) infection is in immunocompetent, middle-aged or older, White women with a low BMI who have middle lobe bronchiectasis, scoliosis, pectus excavatum, or mitral valve prolapse. This patient population typically presents with a chronic nonproductive cough and no other lung abnormalities. This pattern is often called Lady Windermere syndrome, and it appears to be increasing in frequency, especially among women in resource-rich countries. The reasons for this increase are not fully understood, but it may be due to the ubiquity of NTM organisms in the environment and increased host susceptibility. Both of these factors lead to higher rates of infection in people with no prior lung disease, particularly older, immunocompetent women (1). The pattern seen in Lady Windermere syndrome seems to have been incidentally reported in a handful of older men as well.
MAC also causes pulmonary disease in middle-aged or older White men with previous pulmonary conditions such as chronic bronchitis, emphysema, healed TB, bronchiectasis, or silicosis.
Whether MAC causes bronchiectasis or bronchiectasis leads to MAC is not always clear in any given patient; both phenomena occur.
Another important population subject to NTM infection is patients with cystic fibrosis (CF). With better management of CF, patients are living longer and therefore are more likely to develop complications such as NTM disease.
Common symptoms are cough and expectoration, often associated with fatigue, weight loss, and low-grade fever. The course may be slowly progressive or stable for long periods. Respiratory insufficiency and persistent hemoptysis may develop.
Fibronodular infiltrates on chest radiographs resemble those of pulmonary TB, but cavitation is typically thin-walled, and pleural effusion is rare. So-called tree-and-bud infiltrates, seen on chest CT, are also characteristic of MAC disease.
Sputum examination and culture are performed to diagnose MAC infection and to distinguish it from TB.
Determination of drug susceptibility may be helpful for certain organism/drug combinations but can be done only in highly specialized laboratories. For MAC, susceptibility to clarithromycin is a predictor of therapeutic response.Determination of drug susceptibility may be helpful for certain organism/drug combinations but can be done only in highly specialized laboratories. For MAC, susceptibility to clarithromycin is a predictor of therapeutic response.
Treatment of pulmonary disease in adults is tailored to the specific NTM species, disease severity, and drug susceptibility results (2). A 3-drug regimen, typically azithromycin or clarithromycin, rifampin (rifampicin) or rifabutin, and ethambutol, is recommended, sometimes with the addition of parenteral amikacin or streptomycin. Treatment should continue for at least 12 months after culture conversion. Because of the long duration of treatment, adherence and the potential for adverse effects (including drug interactions) must be factored into management decisions. Treatment of pulmonary disease (usually due to MAC) is based on clinical severity. ). A 3-drug regimen, typically azithromycin or clarithromycin, rifampin (rifampicin) or rifabutin, and ethambutol, is recommended, sometimes with the addition of parenteral amikacin or streptomycin. Treatment should continue for at least 12 months after culture conversion. Because of the long duration of treatment, adherence and the potential for adverse effects (including drug interactions) must be factored into management decisions. Treatment of pulmonary disease (usually due to MAC) is based on clinical severity.
For noncavitary nodular or bronchiectatic disease due to MAC, azithromycin 500 mg, ethambutol 25 mg/kg, and rifampin 600 mg orally 3 times/week is an acceptable regimen (For noncavitary nodular or bronchiectatic disease due to MAC, azithromycin 500 mg, ethambutol 25 mg/kg, and rifampin 600 mg orally 3 times/week is an acceptable regimen (2).
For severe bronchiectatic or cavitary disease due to MAC infection with positive sputum smears and cultures, clarithromycin 500 mg orally 2 times a day or azithromycin 250 to 500 mg orally once/day, rifampin 600 mg or rifabutin 5 mg/kg (300 mg) orally once/day, and ethambutol 15 mg/kg orally once/day (or 25 mg/kg 3 times/week) should be used for 12 to 18 months or until cultures are negative for 12 months (For severe bronchiectatic or cavitary disease due to MAC infection with positive sputum smears and cultures, clarithromycin 500 mg orally 2 times a day or azithromycin 250 to 500 mg orally once/day, rifampin 600 mg or rifabutin 5 mg/kg (300 mg) orally once/day, and ethambutol 15 mg/kg orally once/day (or 25 mg/kg 3 times/week) should be used for 12 to 18 months or until cultures are negative for 12 months (2).
For patients with persistent pulmonary MAC infection despite 6 months of therapy, amikacin liposome inhalation suspension, if available, or inhaled amikacin should be added (For patients with persistent pulmonary MAC infection despite 6 months of therapy, amikacin liposome inhalation suspension, if available, or inhaled amikacin should be added (2). For patients with macrolide-resistant MAC infection or cavitary lung disease, parenteral amikacin or streptomycin should be added to the initial regimen for 2 to 3 months.
M. kansasii and M. xenopi infections respond to isoniazid, rifabutin, and ethambutol, with or without streptomycin or clarithromycin, given for 18 to 24 months. infections respond to isoniazid, rifabutin, and ethambutol, with or without streptomycin or clarithromycin, given for 18 to 24 months.
Pulmonary M. abscessus complex disease is particularly challenging to treat because some subspecies are resistant to macrolides. Treatment requires 3 to 4 antibiotics with activity based on susceptibility testing. Therapy may include a combination of amikacin, imipenem/cilastatin, cefoxitin, clofazimine, linezolid, bedaquiline, or omadacycline. complex disease is particularly challenging to treat because some subspecies are resistant to macrolides. Treatment requires 3 to 4 antibiotics with activity based on susceptibility testing. Therapy may include a combination of amikacin, imipenem/cilastatin, cefoxitin, clofazimine, linezolid, bedaquiline, or omadacycline.
All nontuberculous mycobacteria are resistant to pyrazinamide.
Pulmonary resection surgery is recommended in exceptional cases involving well-localized disease in young, otherwise healthy patients.
Pulmonary disease references
1. Parvathaneni A, Malempati SC. Lady Windermere Syndrome: Unravelling an Older Lady's Nightmare. Cureus. 2023;15(10):e47601. Published 2023 Oct 24. doi:10.7759/cureus.47601
2. Daley CL, Iaccarino JM, Lange C, et al. Treatment of Nontuberculous Mycobacterial Pulmonary Disease: An Official ATS/ERS/ESCMID/IDSA Clinical Practice Guideline. Clin Infect Dis. 2020;71(4):905-913. doi:10.1093/cid/ciaa1125
Lymphadenitis
In children 1 to 5 years of age, chronic submaxillary and submandibular cervical lymphadenitis is commonly due to MAC or M. scrofulaceum. It is presumably acquired by oral ingestion of NTM organisms in soil or water.
© Springer Science+Business Media
Diagnosis is usually by excisional biopsy.
Usually, excision is adequate treatment, and chemotherapy may not be required; however, antibiotics (eg, macrolides) may be needed for recurrent or recalcitrant cases (1).
Lymphadenitis reference
1. Mandell DL, Wald ER, Michaels MG, Dohar JE. Management of nontuberculous mycobacterial cervical lymphadenitis. Arch Otolaryngol Head Neck Surg. 2003;129(3):341-344. doi:10.1001/archotol.129.3.341
Cutaneous Disease
Swimming pool granuloma or fish tank granuloma is a protracted but self-limited superficial granulomatous ulcerating disease usually caused by M. marinum contracted from, for example, swimming in a contaminated pool or cleaning a home aquarium. M. ulcerans and M. kansasii are occasionally involved.
Erythematous lesions that enlarge and become violaceous nodules most frequently occur on the upper extremities or knees.
Healing may occur spontaneously, but minocycline or doxycycline 100 to 200 mg orally once/day, clarithromycin 500 mg orally 2 times a day, or rifampin (rifampicin) plus ethambutol for 3 to 6 months have been effective against Healing may occur spontaneously, but minocycline or doxycycline 100 to 200 mg orally once/day, clarithromycin 500 mg orally 2 times a day, or rifampin (rifampicin) plus ethambutol for 3 to 6 months have been effective againstM. marinum.
Buruli ulcer (also known as Bairnsdale or Daintree ulcer) is caused by M. ulcerans and occurs in rural areas of > 30 tropical and subtropical countries; most cases occur in West and Central Africa, and areas in Victoria province, Australia, have seen an increase in cases (1). It starts as a painless subcutaneous nodule, a large painless area of induration, or a diffuse painless swelling of the legs, arms, or face. The infection progresses to cause extensive destruction of the skin and soft tissue; large ulcers may form on the legs or arms. Healing may result in a severe contracture, scarring, and deformity.
For diagnosis, molecular methods such as polymerase chain reaction testing should be performed.
The World Health Organization (WHO) recommends 8 weeks of once/day combination therapy with rifampin 10 mg/kg orally plus either streptomycin 15 mg/kg IM, clarithromycin 7.5 mg/kg orally (preferred during pregnancy), or moxifloxacin 400 mg orally. However, The World Health Organization (WHO) recommends 8 weeks of once/day combination therapy with rifampin 10 mg/kg orally plus either streptomycin 15 mg/kg IM, clarithromycin 7.5 mg/kg orally (preferred during pregnancy), or moxifloxacin 400 mg orally. However,streptomycin is problematic because it is parenteral and toxic. The WHO states that a study suggests the combination of rifampin (10 mg/kg once/day) and clarithromycin (7.5 mg/kg 2 times a day) is the recommended treatment (is problematic because it is parenteral and toxic. The WHO states that a study suggests the combination of rifampin (10 mg/kg once/day) and clarithromycin (7.5 mg/kg 2 times a day) is the recommended treatment (2). An ongoing randomized trial is being done to evaluate whether the addition of amoxicillin/clavulanate to this regimen may offer better efficacy and tolerability (). An ongoing randomized trial is being done to evaluate whether the addition of amoxicillin/clavulanate to this regimen may offer better efficacy and tolerability (3).
Cutaneous infection references
1. Ravindran B, Hennessy D, O'Hara M, et al. Epidemiology of Buruli Ulcer in Victoria, Australia, 2017-2022. Emerg Infect Dis. 2025;31(3):448-457. doi:10.3201/eid3103.240938
2. World Health Organization (WHO): Buruli ulcer (Mycobacterium ulcerans infection). January 12, 2023. Accessed October 2, 2025.
3. ClinicalTrials.gov. Beta-Lactam Containing Regimen for the Shortening of Buruli Ulcer Disease Therapy (BLMs4BU). December 1, 2021. Accessed October 29, 2025.
Wound and Foreign Body Infections
Nontuberculous mycobacteria form biofilms; they can survive in water systems in residential, office, and health care facilities. They are difficult to eradicate with common decontamination practices (eg, using chlorine, organomercurials, or alkaline glutaraldehyde).
Rapidly growing nontuberculous mycobacteria (M. fortuitum complex, M. chelonae, M. abscessus complex) can cause nosocomial outbreaks of infections, usually due to injection of contaminated solutions, wound contamination with nonsterile water, use of contaminated instruments, or implantation of contaminated medical devices. These infections may also develop after cosmetic procedures, acupuncture, or tattooing. M. fortuitum complex has caused serious infections of penetrating wounds in the eyes and skin (especially feet), in tattoos, and in patients receiving contaminated materials (eg, porcine heart valves, breast implants, bone wax).
In the United States, outbreaks of M. abscessus infection occurred in Georgia (2015) and California (2016). These outbreaks occurred in children when water contaminated with M. abscessus biofilm was used during pulpotomy (a dental procedure); severe infection resulted.
Treatment usually requires extensive debridement and removal of the foreign material.
Several medications have been efficacious when used for the treatment for nontuberculous mycobacterial skin and soft-tissue infections (1, 2). Useful medications include:
Imipenem 1 g IV every 6 hours
Levofloxacin 500 mg IV or orally once/dayLevofloxacin 500 mg IV or orally once/day
Clarithromycin 500 mg orally 2 times a dayClarithromycin 500 mg orally 2 times a day
Trimethoprim/sulfamethoxazole 1 double-strength tablet orally 2 times a dayTrimethoprim/sulfamethoxazole 1 double-strength tablet orally 2 times a day
Doxycycline 100 to 200 mg orally once/dayDoxycycline 100 to 200 mg orally once/day
Cefoxitin 2 g IV every 6 to 8 hoursCefoxitin 2 g IV every 6 to 8 hours
Amikacin 10 to 15 mg/kg IV once/day Amikacin 10 to 15 mg/kg IV once/day
Combination therapy with at least 2 medications that have in vitro activity is recommended. Duration of therapy averages 24 months and may be longer if the infected foreign material remains in the body. Amikacin is usually included for the first 3 to 6 months of therapy.
Infections caused by M. abscessus and M. chelonae are usually resistant to most antibiotics (including macrolides), have proved extremely difficult or impossible to cure, and should be referred to an experienced specialist (3).
Wound and foreign body infections references
1. Shulha JA, Escalante P, Wilson JW. Pharmacotherapy Approaches in Nontuberculous Mycobacteria Infections. Mayo Clin Proc. 2019;94(8):1567-1581. doi:10.1016/j.mayocp.2018.12.011
2. Griffith DE, Aksamit T, Brown-Elliott BA, et al. An official ATS/IDSA statement: diagnosis, treatment, and prevention of nontuberculous mycobacterial diseases. Am J Respir Crit Care Med. 2007;175(4):367-416. doi:10.1164/rccm.200604-571ST
3. Nguyen TQ, Heo BE, Jeon S, et al. Exploring antibiotic resistance mechanisms in Mycobacterium abscessus for enhanced therapeutic approaches. Front Microbiol. 2024;15:1331508. Published 2024 Feb 6. doi:10.3389/fmicb.2024.1331508
Disseminated Disease
Mycobacterium avium complex (MAC) commonly causes disseminated disease in patients with advanced HIV infection and occasionally in those with other immunocompromised states, including organ transplantation and hairy cell leukemia. In patients with advanced HIV infection, disseminated MAC infection usually develops late (unlike TB, which develops early), occurring simultaneously with other opportunistic infections (1).
Disseminated MAC infection causes fever, anemia, thrombocytopenia, diarrhea, and abdominal pain (features similar to Whipple disease).
Diagnosis of disseminated MAC infection can be confirmed by cultures of blood or bone marrow or by biopsy (eg, percutaneous fine-needle biopsy of liver or necrotic lymph nodes). Organisms may be identified in stool and respiratory specimens, but organisms from these specimens may represent colonization rather than true disease.
Combination therapy to clear bacteremia and alleviate symptoms usually requires 2 or 3 medications; one combination is clarithromycin 500 mg orally 2 times a day or azithromycin 600 mg orally once/day, plus ethambutol (EMB) 15 to 25 mg/kg orally once/day. Sometimes rifabutin 300 mg orally once/day is also given. After successful treatment, chronic suppression with Combination therapy to clear bacteremia and alleviate symptoms usually requires 2 or 3 medications; one combination is clarithromycin 500 mg orally 2 times a day or azithromycin 600 mg orally once/day, plus ethambutol (EMB) 15 to 25 mg/kg orally once/day. Sometimes rifabutin 300 mg orally once/day is also given. After successful treatment, chronic suppression withclarithromycin or azithromycin plus EMB is necessary to prevent relapse.
Patients with HIV infection who were not diagnosed before presenting with disseminated MAC infection may receive up to 2 weeks of antimycobacterial treatment before starting antiretroviral therapy (ART) to decrease the risk of developing immune reconstitution inflammatory syndrome (IRIS).
Primary prophylaxis for MAC is not recommended for patients with HIV infection who immediately start ART (1). MAC prophylaxis is indicated for patients with a CD4 count < 50 cells/mcL who are not receiving ART, who have persistent viremia on ART, or who cannot be fully suppressed because of resistance. Before prophylaxis is started, disseminated MAC infection should be ruled out clinically or by doing a blood culture to check for acid-fast bacilli.
Disseminated disease reference
1. National Institutes of Health; Centers for Disease Control and Prevention; HIV Medicine Association of the Infectious Diseases Society of America Panel on Guidelines for the Prevention and Treatment of Opportunistic Infections in Adults and Adolescents with HIV— A Working Group of the Office of AIDS Research Advisory Council (OARAC). Guidelines for the Prevention and Treatment of Opportunistic Infections in Adults and Adolescents with HIV: Disseminated Mycobacterium avium Complex Disease. August 15, 2024. Accessed October 3, 2025.
Drugs Mentioned In This Article



