Cholestasis in the Newborn

ByJaime Belkind-Gerson, MD, MSc, University of Colorado
Reviewed/Revised Modified Aug 2025
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Cholestasis is a reduction or stoppage of bile flow. As a result, bilirubin backs up into the bloodstream (hyperbilirubinemia), leading to a yellow discoloration of the whites of the eyes and skin called jaundice.

  • Cholestasis has numerous causes, including infections, metabolic problems, genetic defects, and blockages.

  • The most common symptoms are jaundice and dark urine.

  • The diagnosis is made by blood tests, imaging tests, and sometimes liver biopsy.

  • Treatment depends on the cause.

Bilirubin is a yellow substance formed when hemoglobin (the part of red blood cells that carries oxygen) is broken down as part of the normal process of recycling old or damaged red blood cells.

Bilirubin is carried in the bloodstream to the liver and processed so that it can be excreted out of the liver as part of bile (the digestive fluid produced by the liver). Bilirubin processing in the liver involves attaching it to another chemical substance in a process called conjugation. Processed bilirubin in the bile is called conjugated bilirubin. Unprocessed bilirubin is called unconjugated bilirubin.

Bile is transported through the bile ducts into the beginning of the small intestine (duodenum). If bilirubin cannot be processed and excreted by the liver and bile ducts quickly enough, it builds up in the blood (hyperbilirubinemia). The excess bilirubin settles in the skin, the whites of the eyes, and other tissues, causing them to turn yellow (jaundice).

In cholestasis, the liver cells process bilirubin properly, but the excretion of bile is impaired at some point between the liver cells and the duodenum. This results in an increase in conjugated bilirubin in the blood and a decrease in bile delivered to the small intestine.

Another effect of bile not being excreted normally into the small intestine is that digestion is impaired. Bile is important for digestion because it helps the body absorb fats and the fat-soluble vitamins A, D, E, and K. When there is not enough bile in the intestine, fat absorption is impaired, which can lead to vitamin deficiency, inadequate nutrition, and a lack of expected growth and weight gain.

View of the Liver

Causes of Cholestasis in Newborns

Cholestasis in the newborn can be caused by the following:

  • Biliary atresia

  • Biliary cysts

  • Infection

  • An immune disorder

  • Metabolic disorders

  • Genetic defects

  • Toxic causes

Biliary atresia is a blockage of the bile ducts that starts several weeks after birth. It is rarely present in preterm infants or in newborns at birth. Affected infants typically develop jaundice in the first several weeks of life.

Biliary cysts (bile duct cysts) are enlargements of parts of the bile ducts. These rare cysts are typically caused by a birth defect in the area where the bile duct and the pancreatic duct meet (see figure View of the Liver). Biliary cysts are more common among infants who have polycystic kidney disease (PKD). PKD is an inherited disorder that causes cysts to form in the kidneys.

Infections can lead to cholestasis in the newborn. Examples include the following:

Gestational alloimmune liver disease is a disorder that begins before birth. In this disease, antibodies from the mother cross the placenta and attack the fetus's liver.

Metabolic disorders that cause cholestasis are numerous and include alpha-1 antitrypsin deficiency, galactosemia, tyrosinemia, bile acid defects, and fatty acid oxidation disorders. These disorders occur when the newborn is missing an enzyme that is needed to break down a certain substance, allowing toxic substances to accumulate and damage the liver.

Genetic defects, such as Alagille syndrome and cystic fibrosis, may cause cholestasis in the newborn. Genetic defects and other gene mutations can disrupt normal bile production and removal, which causes cholestasis.

Toxic causes include the use of intravenous feeding (parenteral nutrition) in extremely preterm newborns or in infants who have short bowel syndrome. In recent years, centers have begun using a different type of fat in the intravenous formulation, which appears to have reduced the risk of cholestasis.

Neonatal hepatitis syndrome is the term used to describe inflammation in the newborn's liver for which there is no identified cause. This diagnosis is being made less frequently due to advances in tests that can determine an exact cause.

Symptoms of Cholestasis in Newborns

Symptoms of cholestasis typically develop during the first 2 weeks of a newborn's life. Although most infants have some degree of jaundice, those with cholestasis also often have dark urine, light-colored stools, and an enlarged liver. High bilirubin levels may be accompanied by a buildup of bile salts in the blood. This buildup can cause itching, which makes infants irritable.

Because infants with cholestasis may not properly absorb fats and vitamins, they may not grow well.

Other problems, such as abdominal swelling caused by fluid in the abdomen (ascites) and bleeding in the upper digestive tract caused by enlarged veins in the esophagus (esophageal varices), may develop as liver disease progresses.

Diagnosis of Cholestasis in Newborns

  • Blood tests for bilirubin levels

  • Liver blood tests

  • Other tests for metabolic, infectious, and genetic causes

  • Imaging tests

  • Sometimes biopsy of the liver

Almost all newborns have higher bilirubin levels in their blood (hyperbilirubinemia) during the first week of life than is normal at other ages. This normal jaundice (physiologic jaundice) usually resolves over a week or two, and the bilirubin level returns to normal. (See also Jaundice in the Newborn.)

If infants still have jaundice after 2 weeks of age, doctors test the blood to see if the elevated bilirubin is conjugated or unconjugated. A high level of conjugated bilirubin indicates liver dysfunction and possible cholestasis. (A high level of unconjugated bilirubin indicates a cause other than liver dysfunction; see Causes of Jaundice in Newborns). If the test indicates cholestasis is present, infants have additional blood tests to determine if the liver is inflamed or not functioning normally (see Liver Blood Tests).

Lab Test

Doctors do other tests to determine the cause of cholestasis. For example, urine is tested to look for infections and metabolic disorders, and various genetic tests are done to look for gene mutations or defects. Doctors also review the results of the routine newborn screening tests that are done at birth.

Doctors do ultrasound of the abdomen to assess the size of the liver and view the gallbladder and major bile duct.

Another type of imaging test called cholescintigraphy (also called hepatobiliary scintigraphy or a HIDA [hydroxy iminodiacetic acid] scan) helps doctors to diagnose problems of the liver, gallbladder, and bile ducts. This test shows doctors how well the liver is excreting bile and allows them to track the flow of bile from the liver into the small intestine.

Another type of x-ray test that allows doctors to view the bile ducts and gallbladder, called endoscopic retrograde cholangiopancreatography (ERCP), is sometimes done at specialized medical centers.

If doctors cannot diagnose the cause, they remove a sample of the infant's liver for further evaluation (biopsy). The biopsy may be done with or without operative cholangiography, which involves the injection of a substance that can be seen on x-rays directly into the gallbladder to better determine if the bile ducts are normal.

Treatment of Cholestasis in Newborns

  • Treatment of the specific cause

  • Supportive care, including good nutrition and vitamin supplements

Treatment of the cause

Infants who have biliary atresia are treated with a surgical procedure called portoenterostomy (Kasai procedure). Ideally, this procedure should be done in the first month of life. During this procedure, a part of the small intestine is attached to an area of the liver so that bile can drain into the small intestine. Even with this procedure and optimal care, many infants ultimately require a liver transplant.

Some metabolic disorders such as galactosemia can be treated. Galactosemia is treated by eliminating milk and milk products (both human and cow's milk contain the sugar galactose) from the infant's diet. Typically, infants are given a soy formula.

Infants who have gestational alloimmune liver disease may be treated with immune globulin (antibodies obtained from the blood of people with a normal immune system) given by vein or by withdrawing a large amount of the infant's blood and replacing it with transfused blood (exchange transfusion).

Cholestasis caused by intravenous nutrition will correct itself if the intravenous nutrition is stopped before the infant develops severe liver disease. If intravenous nutrition cannot be stopped, a different formulation containing fish oil can be used to relieve the cholestasis.will correct itself if the intravenous nutrition is stopped before the infant develops severe liver disease. If intravenous nutrition cannot be stopped, a different formulation containing fish oil can be used to relieve the cholestasis.

Supportive care

It is important to promote good nutrition and give supplements for any deficiencies in vitamins A, D, E, and K. Infants with cholestasis typically do not absorb fat well, so using formulas that contain specialized fat (medium-chain triglycerides) improves their fat absorption and growth. Some infants are not able to drink enough formula to achieve normal growth and may need a concentrated formula that contains more calories per ounce.

Infants who have some bile flow may be given ursodeoxycholic acid to relieve itching, increase bile flow, and potentially improve their liver disease.

Prognosis for Cholestasis in Newborns

Prognosis varies greatly. Depending on the cause, infants may recover completely or develop liver failure or cirrhosis of the liver (scarring of the liver).

Biliary atresia can result in progressively worsening liver disease even if it is appropriately diagnosed and treated. In infants who are not treated, biliary atresia causes cirrhosis by several months of age then liver failure and death by 1 year of age.

Gestational alloimmune liver disease that is not treated early typically has a poor prognosis.

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